Design and synthesis of fused bicyclic inhibitors targeting the L5 loop site of centromere-associated protein E

Bioorg Med Chem Lett. 2016 Sep 1;26(17):4296-300. doi: 10.1016/j.bmcl.2016.07.038. Epub 2016 Jul 19.

Abstract

Centromere-associated protein-E (CENP-E) is a mitotic kinesin which plays roles in cell division, and is regarded as a promising therapeutic target for the next generation of anti-mitotic agents. We designed novel fused bicyclic CENP-E inhibitors starting from previous reported dihydrobenzofuran derivative (S)-(+)-1. Our design concept was to adjust the electron density distribution on the benzene ring of the dihydrobenzofuran moiety to increase the positive charge for targeting the negatively charged L5 loop of CENP-E, using predictions from electrostatic potential map (EPM) analysis. For the efficient synthesis of our 2,3-dihydro-1-benzothiophene 1,1-dioxide derivatives, a new synthetic method was developed. As a result, we discovered 6-cyano-7-trifluoromethyl-2,3-dihydro-1-benzothiophene 1,1-dioxide derivative (+)-5d (Compound A) as a potent CENP-E inhibitor with promising potential for in vivo activity. In this Letter, we discuss the design and synthetic strategy used in the discovery of (+)-5d and structure-activity relationships for its analogs possessing various fused bicyclic L5 binding moieties.

Keywords: 2,3-Dihydro-1-benzothiophene 1,1-dioxide derivatives; Anti-cancer agent; Anti-mitotic agent; CENP-E; Electrostatic potential map (EPM).

MeSH terms

  • Antineoplastic Agents / chemical synthesis
  • Antineoplastic Agents / chemistry
  • Antineoplastic Agents / pharmacology
  • Binding Sites
  • Bridged Bicyclo Compounds, Heterocyclic / chemical synthesis*
  • Bridged Bicyclo Compounds, Heterocyclic / chemistry
  • Bridged Bicyclo Compounds, Heterocyclic / pharmacology
  • Chromosomal Proteins, Non-Histone / antagonists & inhibitors*
  • Cyclic S-Oxides / chemical synthesis*
  • Cyclic S-Oxides / chemistry
  • Cyclic S-Oxides / pharmacology
  • Drug Delivery Systems*
  • Drug Design*
  • HeLa Cells
  • Humans
  • Imidazoles / chemical synthesis*
  • Imidazoles / chemistry
  • Imidazoles / pharmacology
  • Inhibitory Concentration 50
  • Molecular Structure
  • Protein Binding / drug effects
  • Structure-Activity Relationship

Substances

  • Antineoplastic Agents
  • Bridged Bicyclo Compounds, Heterocyclic
  • Chromosomal Proteins, Non-Histone
  • Cyclic S-Oxides
  • Imidazoles
  • N-(7-cyano-1,1-dioxido-6-(trifluoromethyl)-2,3-dihydro-1-benzothiophen-3-yl)-N-(2-(dimethylamino)ethyl)-3-(4-fluoro-3-methylphenyl)-5-methoxyimidazo(1,2-a)pyridine-2-carboxamide
  • centromere protein E